PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OGLUM01G23750.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family C3H
Protein Properties Length: 697aa    MW: 74420.6 Da    PI: 5.4056
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OGLUM01G23750.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH185.1e-06459481225
                      -S---SGGGGTS--TTTTT-SS-S CS
          zf-CCCH   2 ktelCrffartGtCkyGdrCkFaH 25 
                      k ++C ++ar G C  Gd C++ H
  OGLUM01G23750.1 459 KSKPCTHYAR-GSCLKGDDCPYDH 481
                      6789******.************* PP

2zf-CCCH31.14e-10487508526
                      --SGGGGTS--TTTTT-SS-SS CS
          zf-CCCH   5 lCrffartGtCkyGdrCkFaHg 26 
                      +C++f+++G C +Gd+CkF+H+
  OGLUM01G23750.1 487 PCHNFMENGMCIRGDKCKFSHV 508
                      7********************6 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5010313.967428455IPR000571Zinc finger, CCCH-type
SuperFamilySSF902292.35E-5429453IPR000571Zinc finger, CCCH-type
SMARTSM003560.079429454IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.109.3E-4456482IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010315.187457484IPR000571Zinc finger, CCCH-type
SMARTSM003564.8E-5457483IPR000571Zinc finger, CCCH-type
SuperFamilySSF902292.62E-5459482IPR000571Zinc finger, CCCH-type
SMARTSM003560.0018485509IPR000571Zinc finger, CCCH-type
SuperFamilySSF902294.84E-6486509IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010314.277487510IPR000571Zinc finger, CCCH-type
PfamPF006423.9E-7487508IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.102.3E-4487507IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 697 aa     Download sequence    Send to blast
MEEPSPVPPA AAPATLAAAP PTTDVLSRRR AHLDSASYRA LSRLFSHCLH LHPPRHAACP  60
DAEVETAAAA IPPGVSGGLP HVVSPPPADV GGDRGKNLEV EVALGNPTPH ETPSTSASPD  120
AAANPTTDPG VVPQGTEEGR VAGVERVEGV EEVVFAGGTS GEADADGDEL GAGAGLMGDD  180
EALRSMQACL DGEDSELVIE MVGNDDEQLQ LDAMMNNLSG LIDDASACVM SAQSCGVSGD  240
KLQSDDRVAE EVKELGAGIG NDRSVCSLDH GSLDGGGGFE EGEIEGDTQN LDADDSGNSE  300
LQDDVELEED FDSRRIEEDG SCGHDVKSNL HLIPQKGNGD IARNMLCNSK GDSQMHVARA  360
QAVSYDEVLD WNETPLPDDK ALKHGNTRKR TLTEERKAKK TKTKRIKRAL QREAEGVKRL  420
KLQPVIKPKV VKVCHFYLHG KCQQGNLCKF SHDTTPLTKS KPCTHYARGS CLKGDDCPYD  480
HELSKYPCHN FMENGMCIRG DKCKFSHVIP TAEGPSTPDA KKSNASSVPE KANCQEQTSR  540
QKTSTVYSVE PATSAPIKHH SILKNLAGIS GNAQKVPVRI PRGIQFLPFN KDRPDSSILH  600
QDVVSTEKHK NPTGGPHQNF GRPQPADGEK LGKHNGHRSA PLLDEKDSSK QADLHPCSEP  660
KKNSLPTTAA VPSSVSTQHE VSEASRILQE FLFGSGN
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0033080.0AP003308.3 Oryza sativa Japonica Group genomic DNA, chromosome 1, BAC clone:B1129G05.
GenBankAP0149570.0AP014957.1 Oryza sativa Japonica Group DNA, chromosome 1, cultivar: Nipponbare, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015622402.10.0PREDICTED: zinc finger CCCH domain-containing protein 7
RefseqXP_015622403.10.0PREDICTED: zinc finger CCCH domain-containing protein 7
SwissprotQ657B30.0C3H7_ORYSJ; Zinc finger CCCH domain-containing protein 7
TrEMBLA0A0D9YAR30.0A0A0D9YAR3_9ORYZ; Uncharacterized protein
STRINGBGIOSGA003802-PA0.0(Oryza sativa Indica Group)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP88383743
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G08505.21e-06C3H family protein